• Kaur K, Saxena A, Debnath I, O'Brien JL, Ajami NJ, et al. Antibiotic-mediated bacteriome depletion in ApcMin/+ mice is associated with reduction in mucus-producing goblet cells and increased colorectal cancer progression. Cancer Med. 2018 May;7(5):2003-2012. PubMed PMID: 29624892; PubMed Central PMCID: PMC5943478.
• Gopalakrishnan V, Spencer CN, Nezi L, Reuben A, Andrews MC, et al. Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients. Science. 2018 Jan 5;359(6371):97-103. PubMed PMID: 29097493; NIHMSID: NIHMS928090; PubMed Central PMCID: PMC5827966.
• Ye X, Wang R, Bhattacharya R, Boulbes DR, Fan F, et al. Fusobacterium Nucleatum Subspecies Animalis Influences Proinflammatory Cytokine Expression and Monocyte Activation in Human Colorectal Tumors. Cancer Prev Res (Phila). 2017 Jul;10(7):398-409. PubMed PMID: 28483840.
• Galloway-Peña JR, Smith DP, Sahasrabhojane P, Wadsworth WD, Fellman BM, et al. Characterization of oral and gut microbiome temporal variability in hospitalized cancer patients. Genome Med. 2017 Feb 28;9(1):21. PubMed PMID: 28245856; PubMed Central PMCID: PMC5331640.
• Galloway-Peña JR, Smith DP, Sahasrabhojane P, Ajami NJ, Wadsworth WD, et al. The role of the gastrointestinal microbiome in infectious complications during induction chemotherapy for acute myeloid leukemia. Cancer. 2016 Jul 15;122(14):2186-96. PubMed PMID: 27142181; NIHMSID: NIHMS808301; PubMed Central PMCID: PMC5574182.
• Shelburne SA, Ajami NJ, Chibucos MC, Beird HC, Tarrand J, et al. Implementation of a Pan-Genomic Approach to Investigate Holobiont-Infecting Microbe Interaction: A Case Report of a Leukemic Patient with Invasive Mucormycosis. PLoS One. 2015;10(11):e0139851. PubMed PMID: 26556047; PubMed Central PMCID: PMC4640583.
• Green SI, Ajami NJ, Ma L, Poole NM, Price RE, et al. Murine model of chemotherapy-induced extraintestinal pathogenic Escherichia coli translocation. Infect Immun. 2015 Aug;83(8):3243-56. PubMed PMID: 26034214; PubMed Central PMCID: PMC4496622.
• Ajami NJ, Cope JL, Wong MC, Petrosino JF, Chesnel L. Impact of Oral Fidaxomicin Administration on the Intestinal Microbiota and Susceptibility to Clostridium difficile Colonization in Mice. Antimicrob Agents Chemother. 2018 May;62(5)PubMed PMID: 29463537; PubMed Central PMCID: PMC5923166.
• Auchtung TA, Fofanova TY, Stewart CJ, Nash AK, Wong MC, et al. Investigating Colonization of the Healthy Adult Gastrointestinal Tract by Fungi. mSphere. 2018 Mar-Apr;3(2)PubMed PMID: 29600282; PubMed Central PMCID: PMC5874442.
• Whitfield-Cargile CM, Chamoun-Emanuelli AM, Cohen ND, Richardson LM, Ajami NJ, et al. Differential effects of selective and non-selective cyclooxygenase inhibitors on fecal microbiota in adult horses. PLoS One. 2018;13(8):e0202527. PubMed PMID: 30138339; PubMed Central PMCID: PMC6107168.
• Nash AK, Auchtung TA, Wong MC, Smith DP, Gesell JR, et al. The gut mycobiome of the Human Microbiome Project healthy cohort. Microbiome. 2017 Nov 25;5(1):153. PubMed PMID: 29178920; PubMed Central PMCID: PMC5702186.
• Jiang ZD, Ajami NJ, Petrosino JF, Jun G, Hanis CL, et al. Randomised clinical trial: faecal microbiota transplantation for recurrent Clostridum difficile infection - fresh, or frozen, or lyophilised microbiota from a small pool of healthy donors delivered by colonoscopy. Aliment Pharmacol Ther. 2017 Apr;45(7):899-908. PubMed PMID: 28220514.
• Viladomiu M, Kivolowitz C, Abdulhamid A, Dogan B, Victorio D, et al. IgA-coated E coli enriched in Crohn's disease spondyloarthritis promote TH17-dependent inflammation. Sci Transl Med. 2017 Feb 8;9(376)PubMed PMID: 28179509.
• Saxena K, Simon LM, Zeng XL, Blutt SE, Crawford SE, et al. A paradox of transcriptional and functional innate interferon responses of human intestinal enteroids to enteric virus infection. Proc Natl Acad Sci U S A. 2017 Jan 24;114(4):E570-E579. PubMed PMID: 28069942; PubMed Central PMCID: PMC5278484.
• Kirpich IA, Petrosino J, Ajami N, Feng W, Wang Y, et al. Saturated and Unsaturated Dietary Fats Differentially Modulate Ethanol-Induced Changes in Gut Microbiome and Metabolome in a Mouse Model of Alcoholic Liver Disease. Am J Pathol. 2016 Apr;186(4):765-76. PubMed PMID: 27012191; PubMed Central PMCID: PMC5808146.
• Du F, Hinke SA, Cavanaugh C, Polidori D, Wallace N, et al. Potent Sodium/Glucose Cotransporter SGLT1/2 Dual Inhibition Improves Glycemic Control Without Marked Gastrointestinal Adaptation or Colonic Microbiota Changes in Rodents. J Pharmacol Exp Ther. 2018 Jun;365(3):676-687. PubMed PMID: 29674332.
• Jacob V, Crawford C, Cohen-Mekelburg S, Viladomiu M, Putzel GG, et al. Single Delivery of High-Diversity Fecal Microbiota Preparation by Colonoscopy Is Safe and Effective in Increasing Microbial Diversity in Active Ulcerative Colitis. Inflamm Bowel Dis. 2017 Jun;23(6):903-911. PubMed PMID: 28445246.
• Mulukutla SN, Hsu JW, Gaba R, Bohren KM, Guthikonda A, et al. Arginine Metabolism Is Altered in Adults with A-β + Ketosis-Prone Diabetes. J Nutr. 2018 Feb 1;148(2):185-193. PubMed PMID: 29490093.
• Preidis GA, Ajami NJ, Wong MC, Bessard BC, Conner ME, et al. Microbial-Derived Metabolites Reflect an Altered Intestinal Microbiota during Catch-Up Growth in Undernourished Neonatal Mice. J Nutr. 2016 May;146(5):940-8. PubMed PMID: 27052538; PubMed Central PMCID: PMC4841929.
• Preidis GA, Ajami NJ, Wong MC, Bessard BC, Conner ME, et al. Composition and function of the undernourished neonatal mouse intestinal microbiome. J Nutr Biochem. 2015 Oct;26(10):1050-7. PubMed PMID: 26070414.
• He B, Nohara K, Ajami NJ, Michalek RD, Tian X, et al. Transmissible microbial and metabolomic remodeling by soluble dietary fiber improves metabolic homeostasis. Sci Rep. 2015 Jun 4;5:10604. PubMed PMID: 26040234; PubMed Central PMCID: PMC4455235.
• Massey VL, Stocke KS, Schmidt RH, Tan M, Ajami N, et al. Oligofructose protects against arsenic-induced liver injury in a model of environment/obesity interaction. Toxicol Appl Pharmacol. 2015 May 1;284(3):304-14. PubMed PMID: 25759243; NIHMSID: NIHMS670676; PubMed Central PMCID: PMC4515777.
• Mejía-León ME, Petrosino JF, Ajami NJ, Domínguez-Bello MG, de la Barca AM. Fecal microbiota imbalance in Mexican children with type 1 diabetes. Sci Rep. 2014 Jan 22;4:3814. PubMed PMID: 24448554; PubMed Central PMCID: PMC3898044.
• Adnan S, Nelson JW, Ajami NJ, Venna VR, Petrosino JF, et al. Alterations in the gut microbiota can elicit hypertension in rats. Physiol Genomics. 2017 Feb 1;49(2):96-104. PubMed PMID: 28011881; PubMed Central PMCID: PMC5336599.
• Kelly TN, Bazzano LA, Ajami NJ, He H, Zhao J, et al. Gut Microbiome Associates With Lifetime Cardiovascular Disease Risk Profile Among Bogalusa Heart Study Participants. Circ Res. 2016 Sep 30;119(8):956-64. PubMed PMID: 27507222; NIHMSID: NIHMS809592; PubMed Central PMCID: PMC5045790.
• Durgan DJ, Ganesh BP, Cope JL, Ajami NJ, Phillips SC, et al. Role of the Gut Microbiome in Obstructive Sleep Apnea-Induced Hypertension. Hypertension. 2016 Feb;67(2):469-74. PubMed PMID: 26711739; NIHMSID: NIHMS743030; PubMed Central PMCID: PMC4713369.
• Toivonen L, Hasegawa K, Ajami NJ, Celedón JC, Mansbach JM, et al. Circulating 25-hydroxyvitamin D, nasopharyngeal microbiota, and bronchiolitis severity. Pediatr Allergy Immunol. 2018 Aug 28;PubMed PMID: 30152883.
• Buendía E, Zakzuk J, San-Juan-Vergara H, Zurek E, Ajami NJ, et al. Gut microbiota components are associated with fixed airway obstruction in asthmatic patients living in the tropics. Sci Rep. 2018 Jun 25;8(1):9582. PubMed PMID: 29941875; PubMed Central PMCID: PMC6018556.
• Stewart CJ, Hasegawa K, Wong MC, Ajami NJ, Petrosino JF, et al. Respiratory Syncytial Virus and Rhinovirus Bronchiolitis Are Associated With Distinct Metabolic Pathways. J Infect Dis. 2018 Mar 13;217(7):1160-1169. PubMed PMID: 29293990.
• Luna PN, Hasegawa K, Ajami NJ, Espinola JA, Henke DM, et al. The association between anterior nares and nasopharyngeal microbiota in infants hospitalized for bronchiolitis. Microbiome. 2018 Jan 3;6(1):2. PubMed PMID: 29298732; PubMed Central PMCID: PMC5751828.
• Hasegawa K, Mansbach JM, Ajami NJ, Petrosino JF, Freishtat RJ, et al. The relationship between nasopharyngeal CCL5 and microbiota on disease severity among infants with bronchiolitis. Allergy. 2017 Nov;72(11):1796-1800. PubMed PMID: 28306146; NIHMSID: NIHMS861015; PubMed Central PMCID: PMC5601014.
• Hasegawa K, Linnemann RW, Mansbach JM, Ajami NJ, Espinola JA, et al. Nasal Airway Microbiota Profile and Severe Bronchiolitis in Infants: A Case-control Study. Pediatr Infect Dis J. 2017 Nov;36(11):1044-1051. PubMed PMID: 28005692; NIHMSID: NIHMS836439; PubMed Central PMCID: PMC5479744.
• Stewart CJ, Mansbach JM, Wong MC, Ajami NJ, Petrosino JF, et al. Associations of Nasopharyngeal Metabolome and Microbiome with Severity among Infants with Bronchiolitis A Multiomic Analysis. Am J Respir Crit Care Med. 2017 Oct 1;196(7):882-891. PubMed PMID: 28530140; PubMed Central PMCID: PMC5649976.
• Mansbach JM, Hasegawa K, Ajami NJ, Petrosino JF, Piedra PA, et al. Serum LL-37 Levels Associated With Severity of Bronchiolitis and Viral Etiology. Clin Infect Dis. 2017 Sep 15;65(6):967-975. PubMed PMID: 28541502; PubMed Central PMCID: PMC5850627.
• Hasegawa K, Stewart CJ, Mansbach JM, Linnemann RW, Ajami NJ, et al. Sphingolipid metabolism potential in fecal microbiome and bronchiolitis in infants: a case-control study. BMC Res Notes. 2017 Jul 26;10(1):325. PubMed PMID: 28747215; PubMed Central PMCID: PMC5530560.
• Hasegawa K, Mansbach JM, Ajami NJ, Petrosino JF, Freishtat RJ, et al. Serum cathelicidin, nasopharyngeal microbiota, and disease severity among infants hospitalized with bronchiolitis. J Allergy Clin Immunol. 2017 Apr;139(4):1383-1386.e6. PubMed PMID: 27845236; NIHMSID: NIHMS829559; PubMed Central PMCID: PMC5385272.
• Hasegawa K, Linnemann RW, Mansbach JM, Ajami NJ, Espinola JA, et al. Household siblings and nasal and fecal microbiota in infants. Pediatr Int. 2017 Apr;59(4):473-481. PubMed PMID: 27638139; NIHMSID: NIHMS817623; PubMed Central PMCID: PMC5354996.
• Santos-Cortez RL, Hutchinson DS, Ajami NJ, Reyes-Quintos MR, Tantoco ML, et al. Middle ear microbiome differences in indigenous Filipinos with chronic otitis media due to a duplication in the A2ML1 gene. Infect Dis Poverty. 2016 Nov 1;5(1):97. PubMed PMID: 27799062; PubMed Central PMCID: PMC5088646.
• Hasegawa K, Mansbach JM, Ajami NJ, Espinola JA, Henke DM, et al. Association of nasopharyngeal microbiota profiles with bronchiolitis severity in infants hospitalised for bronchiolitis. Eur Respir J. 2016 Nov;48(5):1329-1339. PubMed PMID: 27799386; NIHMSID: NIHMS859660; PubMed Central PMCID: PMC5459592.
• Santos-Cortez RL, Reyes-Quintos MR, Tantoco ML, Abbe I, Llanes EG, et al. Genetic and Environmental Determinants of Otitis Media in an Indigenous Filipino Population. Otolaryngol Head Neck Surg. 2016 Nov;155(5):856-862. PubMed PMID: 27484237; NIHMSID: NIHMS818832; PubMed Central PMCID: PMC5093071.
• Hasegawa K, Linnemann RW, Mansbach JM, Ajami NJ, Espinola JA, et al. The Fecal Microbiota Profile and Bronchiolitis in Infants. Pediatrics. 2016 Jul;138(1)PubMed PMID: 27354456; PubMed Central PMCID: PMC4925084.
• Mansbach JM, Hasegawa K, Henke DM, Ajami NJ, Petrosino JF, et al. Respiratory syncytial virus and rhinovirus severe bronchiolitis are associated with distinct nasopharyngeal microbiota. J Allergy Clin Immunol. 2016 Jun;137(6):1909-1913.e4. PubMed PMID: 27061249; NIHMSID: NIHMS766341; PubMed Central PMCID: PMC4899255.
• Ajami NJ, Wong MC, Ross MC, Lloyd RE, Petrosino JF. Maximal viral information recovery from sequence data using VirMAP. Nat Commun. 2018 Aug 10;9(1):3205. PubMed PMID: 30097567; PubMed Central PMCID: PMC6086868.
• Penington JS, Penno MAS, Ngui KM, Ajami NJ, Roth-Schulze AJ, et al. Influence of fecal collection conditions and 16S rRNA gene sequencing at two centers on human gut microbiota analysis. Sci Rep. 2018 Mar 12;8(1):4386. PubMed PMID: 29531234; PubMed Central PMCID: PMC5847573.
• Abrahamson M, Hooker E, Ajami NJ, Petrosino JF, Orwoll ES. Successful collection of stool samples for microbiome analyses from a large community-based population of elderly men. Contemp Clin Trials Commun. 2017 Sep;7:158-162. PubMed PMID: 29250605; NIHMSID: NIHMS894094; PubMed Central PMCID: PMC5726580.
• Gummadidala PM, Holder ME, O'Brien JL, Ajami NJ, Petrosino JF, et al. Complete Genome Sequence of Vibrio gazogenes ATCC 43942. Genome Announc. 2017 Jul 27;5(30)PubMed PMID: 28751405; PubMed Central PMCID: PMC5532843.
D'Amico L, Ajami NJ, Adachi JA, Gascoyne PR, Petrosino JF. Isolation and concentration of bacteria from blood using microfluidic membraneless dialysis and dielectrophoresis. Lab Chip. 2017 Mar 29;17(7):1340-1348. PubMed PMID: 28276545; NIHMSID: NIHMS952988; PubMed Central PMCID: PMC5894507.
• Petrosyan V, Holder M, Ajami NJ, Petrosino JF, Sahasrabhojane P, et al. Complete Genome Sequence of Streptococcus mitis Strain SVGS_061 Isolated from a Neutropenic Patient with Viridans Group Streptococcal Shock Syndrome. Genome Announc. 2016 Apr 7;4(2)PubMed PMID: 27056234; PubMed Central PMCID: PMC4824267.
• Auchtung TA, Holder ME, Gesell JR, Ajami NJ, Duarte RT, et al. Complete Genome Sequence of Turicibacter sp Strain H121, Isolated from the Feces of a Contaminated Germ-Free Mouse. Genome Announc. 2016 Mar 24;4(2)PubMed PMID: 27013036; PubMed Central PMCID: PMC4807225.
• Atkins LM, Holder ME, Ajami NJ, Metcalf GA, Weissenberger GM, et al. High-Quality Draft Genome Sequence of Francisella tularensis subsp holarctica Strain OR96-0246. Genome Announc. 2015 Aug 13;3(4)PubMed PMID: 26272574; PubMed Central PMCID: PMC4536685.
• Flores AR, Galloway-Peña J, Sahasrabhojane P, Saldaña M, Yao H, et al. Sequence type 1 group B Streptococcus, an emerging cause of invasive disease in adults, evolves by small genetic changes. Proc Natl Acad Sci U S A. 2015 May 19;112(20):6431-6. PubMed PMID: 25941374; PubMed Central PMCID: PMC4443349.
• Stewart CJ, Auchtung TA, Ajami NJ, Velasquez K, Smith DP, et al. Correction: Effects of tobacco smoke and electronic cigarette vapor exposure on the oral and gut microbiota in humans: a pilot study. PeerJ. 2018;6PubMed PMID: 30148001; PubMed Central PMCID: PMC6106372.
• Okyere A, Bishoff D, Oyaro MO, Ajami NJ, Darkoh C. Analysis of Fish Commonly Sold in Local Supermarkets Reveals the Presence of Pathogenic and Multidrug-Resistant Bacterial Communities. Microbiol Insights. 2018;11:1178636118786925. PubMed PMID: 30038503; PubMed Central PMCID: PMC6052494.
• Hoffman KL, Hutchinson DS, Fowler J, Smith DP, Ajami NJ, et al. Oral microbiota reveals signs of acculturation in Mexican American women. PLoS One. 2018;13(4):e0194100. PubMed PMID: 29694348; PubMed Central PMCID: PMC5918619.
• Stewart CJ, Auchtung TA, Ajami NJ, Velasquez K, Smith DP, et al. Effects of tobacco smoke and electronic cigarette vapor exposure on the oral and gut microbiota in humans: a pilot study. PeerJ. 2018;6:e4693. PubMed PMID: 29736335; PubMed Central PMCID: PMC5933315.
• Houghton D, Stewart CJ, Stamp C, Nelson A, Aj Ami NJ, et al. Impact of Age-Related Mitochondrial Dysfunction and Exercise on Intestinal Microbiota Composition. J Gerontol A Biol Sci Med Sci. 2018 Apr 17;73(5):571-578. PubMed PMID: 29045670; PubMed Central PMCID: PMC5905657.
• Lai PS, Allen JG, Hutchinson DS, Ajami NJ, Petrosino JF, et al. Impact of environmental microbiota on human microbiota of workers in academic mouse research facilities: An observational study. PLoS One. 2017;12(7):e0180969. PubMed PMID: 28704437; PubMed Central PMCID: PMC5509249.
• Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, et al. Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP). J Biomol Tech. 2017 Apr;28(1):31-39. PubMed PMID: 28337070; PubMed Central PMCID: PMC5345951.
• Zhang H, Zhao F, Hutchinson DS, Sun W, Ajami NJ, et al. Conjunctival Microbiome Changes Associated With Soft Contact Lens and Orthokeratology Lens Wearing. Invest Ophthalmol Vis Sci. 2017 Jan 1;58(1):128-136. PubMed PMID: 28114568.
• Rothenberg SE, Anders M, Ajami NJ, Petrosino JF, Balogh E. Water management impacts rice methylmercury and the soil microbiome. Sci Total Environ. 2016 Dec 1;572:608-617. PubMed PMID: 27450246; NIHMSID: NIHMS804573; PubMed Central PMCID: PMC5099098.
• Rothenberg SE, Keiser S, Ajami NJ, Wong MC, Gesell J, et al. The role of gut microbiota in fetal methylmercury exposure: Insights from a pilot study. Toxicol Lett. 2016 Feb 3;242:60-67. PubMed PMID: 26626101; NIHMSID: NIHMS746931; PubMed Central PMCID: PMC4707065.
• Jenkins TP, Peachey LE, Ajami NJ, MacDonald AS, Hsieh MH, et al. Schistosoma mansoni infection is associated with quantitative and qualitative modifications of the mammalian intestinal microbiota. Sci Rep. 2018 Aug 13;8(1):12072. PubMed PMID: 30104612; PubMed Central PMCID: PMC6089957.
• Kelly PH, Bahr SM, Serafim TD, Ajami NJ, Petrosino JF, et al. The Gut Microbiome of the Vector Lutzomyia longipalpis Is Essential for Survival of Leishmania infantum. MBio. 2017 Jan 17;8(1)PubMed PMID: 28096483; PubMed Central PMCID: PMC5241394.
• Robinson A, Fiechtner L, Roche B, Ajami NJ, Petrosino JF, et al. Association of Maternal Gestational Weight Gain With the Infant Fecal Microbiota. J Pediatr Gastroenterol Nutr. 2017 Nov;65(5):509-515. PubMed PMID: 28272161; NIHMSID: NIHMS856519; PubMed Central PMCID: PMC5589469.
• Pammi M, O'Brien JL, Ajami NJ, Wong MC, Versalovic J, et al. Development of the cutaneous microbiome in the preterm infant: A prospective longitudinal study. PLoS One. 2017;12(4):e0176669. PubMed PMID: 28448623; PubMed Central PMCID: PMC5407830.
• Buffington SA, Di Prisco GV, Auchtung TA, Ajami NJ, Petrosino JF, et al. Microbial Reconstitution Reverses Maternal Diet-Induced Social and Synaptic Deficits in Offspring. Cell. 2016 Jun 16;165(7):1762-1775. PubMed PMID: 27315483; NIHMSID: NIHMS794301; PubMed Central PMCID: PMC5102250. Robinson A, Fiechtner L, Roche B, Ajami NJ, Petrosino JF, et al. Association of Maternal Gestational Weight Gain With the Infant Fecal Microbiota. J Pediatr Gastroenterol Nutr. 2017 Nov;65(5):509-515. PubMed PMID: 28272161; NIHMSID: NIHMS856519; PubMed Central PMCID: PMC5589469.
• Zanvit P, Konkel JE, Jiao X, Kasagi S, Zhang D, et al. Antibiotics in neonatal life increase murine susceptibility to experimental psoriasis. Nat Commun. 2015 Sep 29;6:8424. PubMed PMID: 26416167; PubMed Central PMCID: PMC4598725.
• San-Juan-Vergara H, Zurek E, Ajami NJ, Mogollon C, Peña M, et al. A Lachnospiraceae-dominated bacterial signature in the fecal microbiota of HIV-infected individuals from Colombia, South America. Sci Rep. 2018 Mar 14;8(1):4479. PubMed PMID: 29540734; PubMed Central PMCID: PMC5852036.
• Spychala MS, Venna VR, Jandzinski M, Doran SJ, Durgan DJ, et al. Age-related changes in the gut microbiota influence systemic inflammation and stroke outcome. Ann Neurol. 2018 Jul;84(1):23-36. PubMed PMID: 29733457; NIHMSID: NIHMS964901; PubMed Central PMCID: PMC6119509.
• Rosshart SP, Vassallo BG, Angeletti D, Hutchinson DS, Morgan AP, et al. Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance. Cell. 2017 Nov 16;171(5):1015-1028.e13. PubMed PMID: 29056339.
• Zárate-Bladés CR, Horai R, Mattapallil MJ, Ajami NJ, Wong M, et al. Gut microbiota as a source of a surrogate antigen that triggers autoimmunity in an immune privileged site. Gut Microbes. 2017 Jan 2;8(1):59-66. PubMed PMID: 28045579; PubMed Central PMCID: PMC5361604.
• de Paiva CS, Jones DB, Stern ME, Bian F, Moore QL, et al. Altered Mucosal Microbiome Diversity and Disease Severity in Sjögren Syndrome. Sci Rep. 2016 Apr 18;6:23561. PubMed PMID: 27087247; PubMed Central PMCID: PMC4834578.
• Kubinak JL, Stephens WZ, Soto R, Petersen C, Chiaro T, et al. MHC variation sculpts individualized microbial communities that control susceptibility to enteric infection. Nat Commun. 2015 Oct 23;6:8642. PubMed PMID: 26494419; NIHMSID: NIHMS723564; PubMed Central PMCID: PMC4621775.
• Runtsch MC, Hu R, Alexander M, Wallace J, Kagele D, et al. MicroRNA-146a constrains multiple parameters of intestinal immunity and increases susceptibility to DSS colitis. Oncotarget. 2015 Oct 6;6(30):28556-72. PubMed PMID: 26456940; PubMed Central PMCID: PMC4745677.
• Horwitz D, McCue T, Mapes AC, Ajami NJ, Petrosino JF, et al. Decreased microbiota diversity associated with urinary tract infection in a trial of bacterial interference. J Infect. 2015 Sep;71(3):358-367. PubMed PMID: 26048203; NIHMSID: NIHMS696985; PubMed Central PMCID: PMC4529357.
• Horstmann N, Sahasrabhojane P, Saldaña M, Ajami NJ, Flores AR, et al. Characterization of the effect of the histidine kinase CovS on response regulator phosphorylation in group A Streptococcus. Infect Immun. 2015 Mar;83(3):1068-77. PubMed PMID: 25561708; PubMed Central PMCID: PMC4333468.
• Youmans BP, Ajami NJ, Jiang ZD, Campbell F, Wadsworth WD, et al. Characterization of the human gut microbiome during travelers' diarrhea. Gut Microbes. 2015;6(2):110-9. PubMed PMID: 25695334; PubMed Central PMCID: PMC4615231.
• Ajami NJ, Hutchinson DS, Petrosino JF. Promise and Pragmatism in Clinical Microbiome Research. Mini Rev Med Chem. 2015;16(3):222-4. PubMed PMID: 26202196.
• Shakhsheer BA, Versten LA, Luo JN, Defazio JR, Klabbers R, et al. Morphine Promotes Colonization of Anastomotic Tissues with Collagenase - Producing Enterococcus faecalis and Causes Leak. J Gastrointest Surg. 2016 Oct;20(10):1744-51. PubMed PMID: 27530446.
• Karandikar UC, Crawford SE, Ajami NJ, Murakami K, Kou B, et al. Detection of human norovirus in intestinal biopsies from immunocompromised transplant patients. J Gen Virol. 2016 Sep;97(9):2291-300. PubMed PMID: 27412790; PubMed Central PMCID: PMC5756488.
• Crawford SE, Ajami N, Parker TD, Kitamoto N, Natori K, et al. Mapping broadly reactive norovirus genogroup I and II monoclonal antibodies. Clin Vaccine Immunol. 2015 Feb;22(2):168-77. PubMed PMID: 25428246; PubMed Central PMCID: PMC4308866.
• Kou B, Crawford SE, Ajami NJ, Czakó R, Neill FH, et al. Characterization of cross-reactive norovirus-specific monoclonal antibodies. Clin Vaccine Immunol. 2015 Feb;22(2):160-7. PubMed PMID: 25428247; PubMed Central PMCID: PMC4308874.
• Zhang S, Sroller V, Zanwar P, Chen CJ, Halvorson SJ, et al. Viral microRNA effects on pathogenesis of polyomavirus SV40 infections in syrian golden hamsters. PLoS Pathog. 2014 Feb;10(2):e1003912. PubMed PMID: 24516384; PubMed Central PMCID: PMC3916418.
• Youmans BP, Ajami NJ, Jiang ZD, Petrosino JF, DuPont HL, et al. Development and accuracy of quantitative real-time polymerase chain reaction assays for detection and quantification of enterotoxigenic Escherichia coli (ETEC) heat labile and heat stable toxin genes in travelers' diarrhea samples. Am J Trop Med Hyg. 2014 Jan;90(1):124-32. PubMed PMID: 24189361; PubMed Central PMCID: PMC3886408.
• Ajami NJ, Kavanagh OV, Ramani S, Crawford SE, Atmar RL, et al. Seroepidemiology of norovirus-associated travelers' diarrhea. J Travel Med. 2014 Jan-Feb;21(1):6-11. PubMed PMID: 24383649; NIHMSID: NIHMS540022; PubMed Central PMCID: PMC3904865.
• Amirian ES, Petrosino JF, Ajami NJ, Liu Y, Mims MP, et al. Potential role of gastrointestinal microbiota composition in prostate cancer risk. Infect Agent Cancer. 2013 Nov 4;8(1):42. PubMed PMID: 24180596; PubMed Central PMCID: PMC3826836.
• Vehik K, Ajami NJ, Hadley D, Petrosino JF, Burkhardt BR. The changing landscape of type 1 diabetes: recent developments and future frontiers. Curr Diab Rep. 2013 Oct;13(5):642-50. PubMed PMID: 23912764; NIHMSID: NIHMS512539; PubMed Central PMCID: PMC3827778.
• Rogers JD, Ajami NJ, Fryszczyn BG, Estes MK, Atmar RL, et al. Identification and characterization of a peptide affinity reagent for detection of noroviruses in clinical samples. J Clin Microbiol. 2013 Jun;51(6):1803-8. PubMed PMID: 23554202; PubMed Central PMCID: PMC3716098.
• Ajami NJ, Barry MA, Carrillo B, Muhaxhiri Z, Neill FH, et al. Antibody responses to norovirus genogroup GI1 and GII4 proteases in volunteers administered Norwalk virus. Clin Vaccine Immunol. 2012 Dec;19(12):1980-3. PubMed PMID: 23035177; PubMed Central PMCID: PMC3535860.
• Sharp TM, Crawford SE, Ajami NJ, Neill FH, Atmar RL, et al. Secretory pathway antagonism by calicivirus homologues of Norwalk virus nonstructural protein p22 is restricted to noroviruses. Virol J. 2012 Sep 3;9:181. PubMed PMID: 22943503; PubMed Central PMCID: PMC3493335.
• Darkoh C, Lichtenberger LM, Ajami N, Dial EJ, Jiang ZD, et al. Bile acids improve the antimicrobial effect of rifaximin. Antimicrob Agents Chemother. 2010 Sep;54(9):3618-24. PubMed PMID: 20547807; PubMed Central PMCID: PMC2934964.
• Ajami N, Koo H, Darkoh C, Atmar RL, Okhuysen PC, et al. Characterization of norovirus-associated traveler's diarrhea. Clin Infect Dis. 2010 Jul 15;51(2):123-30. PubMed PMID: 20540620; NIHMSID: NIHMS294936; PubMed Central PMCID: PMC3150512.
• Koo HL, Ajami N, Atmar RL, DuPont HL. Noroviruses: The leading cause of gastroenteritis worldwide. Discov Med. 2010 Jul;10(50):61-70. PubMed PMID: 20670600; NIHMSID: NIHMS294945; PubMed Central PMCID: PMC3150746.
• Ouyang-Latimer J, Ajami NJ, Jiang ZD, Okhuysen PC, Paredes M, et al. Biochemical and genetic diversity of enterotoxigenic Escherichia coli associated with diarrhea in United States students in Cuernavaca and Guadalajara, Mexico, 2004-2007. J Infect Dis. 2010 Jun 15;201(12):1831-8. PubMed PMID: 20443738.
• Koo HL, Ajami NJ, Jiang ZD, Neill FH, Atmar RL, et al. Noroviruses as a cause of diarrhea in travelers to Guatemala, India, and Mexico. J Clin Microbiol. 2010 May;48(5):1673-6. PubMed PMID: 20305012; PubMed Central PMCID: PMC2863947.
• Kavanagh OV, Ajami NJ, Cheng E, Ciarlet M, Guerrero RA, et al. Rotavirus enterotoxin NSP4 has mucosal adjuvant properties. Vaccine. 2010 Apr 19;28(18):3106-11. PubMed PMID: 20197138; NIHMSID: NIHMS466885; PubMed Central PMCID: PMC3663485.
• Koo HL, Ajami NJ, Jiang ZD, Atmar RL, DuPont HL. Norovirus infection as a cause of sporadic healthcare-associated diarrhoea. J Hosp Infect. 2009 Jun;72(2):185-7. PubMed PMID: 19380178; NIHMSID: NIHMS455626; PubMed Central PMCID: PMC3779636.
• Koo HL, Ajami NJ, Jiang ZD, Dupont HL, Atmar RL, et al. A nosocomial outbreak of norovirus infection masquerading as clostridium difficile infection. Clin Infect Dis. 2009 Apr 1;48(7):e75-7. PubMed PMID: 19245344; NIHMSID: NIHMS455633; PubMed Central PMCID: PMC3761966.
• Gutiérrez MF, Alvarado MV, Martínez E, Ajami NJ. Presence of viral proteins in drinkable water--sufficient condition to consider water a vector of viral transmission?. Water Res. 2007 Jan;41(2):373-8. PubMed PMID: 17084879.